Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015921918.1_cds_XP_016470800.1_63211
CDS Infomation

[gene=LOC107793034] [db_xref=GeneID:107793034] [protein=DEAD-box ATP-dependent RNA helicase 50-like isoform X1] [protein_id=XP_016470800.1] [location=complement(join(2027..2255,2399..2574,2662..2793,5751..5964,9319..9506,19966..20160,20591..21168,22121..22472))] [gbkey=CDS]
Sequence

ATGCTTTCTGCACCAAGAGCACCAGCACCGGCGGTGGCGGCGCCCGCACGTTTCAAATTC
CCAAACGTATGTGGGAATCCTGTTAATCTTCTTCTGCTGCACAGAAATGTTGGTAGTAGT
TGCAAAAGGGTGGTGGTTTCAACTAAAGCTGCTTACAGTCGTATGCCAATGGACACACCA
GGGGCTTACCAGCTTATAGATAAAGAGAGTGGAGATAAATTCATAGTATGGGGAGGTACT
GAAGATGACGACTCTTCCATCCCTTCCAAGGAAGTTCTCTCATGGAAACCTCTAGCTTCT
ACTTCTCCTGACAACAACCACCCTCCTCCAACTCAGAGTAGCAGTAATGAAGCTTCGACT
AGGGGATTGACAGGGAATTTCGGCAGACTGAAATTTCGAAGAATGAGAGATCTAGTAAGA
AAAAGCTACACAAAAAACAAAGAACGCGATGTTGTTGATCACGACAAACACAATATTGCA
GATGCCTCTTCCCGATCATCATTCAGTTCATATAATGAACCTGATCAGTTAAAAGAGCAA
CAAACGCTTAGTCTTCCTAGAGGCCGTGCCAAAATTCAGCAGCTAGAAGACAGAAAGAAT
TTCCAAAAATTAATCAGAGTGGAAGATGAAGATAGAGATATAGTTATCGAAAATGTTAGC
AAACATTTCGCAGGCTATAGCAGTGATTCTCATGCAAAATCTGCAAGAGTAGTTCATCCT
GGATCAAAAGCTTCGGCTTCTCCCTTACGTGGATGGGGTGGGGGATCAAGTCATTACAGT
CTTAAGAGGGAAGAAATTTTTAGAGAAAGGCGAAACTTGGATGATGAAAACAATTTCTTT
AGTAGAAAATCCTTTCAAGAGTTGGGATGCTGTGACTATATGATAGAATCCTTAGGGAAT
CAGCACTTTGTGCGCCCTTCACATATTCAGGCCATGACATTTGGACCCATCATTGCTGGA
AAGAGCTGCATAATATCTGATCAAAGTGGATCTGGAAAGACTTTGGCATATCTACTACCA
CTTATTCAATGTCTTAGGCAAGAAGAACTTCAAGGACTTAGCAAACCATCATCTCAAAGT
CCTCGGGTTGTAGTACTGGCACCAACAGCTGAATTGGCTTCTCAGGTCTTAAGCACCTGC
CGCTCATTTTCGAAATCTGGTGTTCCTTTCCATTCTATGGTTGTTACTGGTGGTTTTCGC
CAGAGAACTCAATTGGAGAACCTAAGACAGGAGTTAGACATTCTTATAGCAACTCCTGGC
CGGTTTATGTTTCTTATCAAAGAGGGCTACTTGCAGTTAACTAATCTCAAGTGTGCTGTG
CTGGATGAGGTTGATATCCTTTTTAGTGATGAGGATTTTGAGACTGCATTTCAATGTTTG
ATTGACTCTTCACCAATCACCACACAGTATCTATTTGTGACTGCAACTTTGCCCATGGAC
ATATACAACAAGCTGGTAGAAAGTTTTCCTGATTGTGAACTAGTAAGTGGTCCTGGTATG
CACCGTACAAGCCCTGGCTTGGAAGAGTTCCTTGTAGATTGCAGTGGAGATGAAACAGCT
GAAAAGAGTCCGGACACAGCTTTTATCAATAAAAAGAATGCTCTACTTCATCTGGTGGAG
GATAGCCCAGTTCCAAAAACAATTGTCTTCTGCAACAAGATTGATTGCTGCAGAAAAGTT
GAGAATGCATTAAAGCGCTTTGACAGGAAAGGATTCTCCATAAAAATTTTACCCTTCCAT
GCTGCACTGGACCAAGGAAGGAGACTTGCAAACATGGAGGAGTTTCGCCGCTCAAAGATG
GAGAACGTTTGTTTGTTCTTGGTGTGCACCGACCGAGCATCCCGAGGTATCGACTTTGAA
GGTGTAGACCATGTGGTCCTCTTTGATTATCCTCGAGACCCTAGCGAATATGTACGTCGT
GTTGGAAGAACTGCCAGGGGTGCTGGTGGAAAAGGAAAGGCATTCATATTTGCCGTTGGG
AAGCAAGTTTCTCTTGCTCGAAGGATAATGGAAAGAAACAAGAAAGGCCACCCAGTCCAT
GATGTGCCGTCAATATTAACTTAG

Peptide Sequence

PEP ID

XP_016470800.1
PEP Infomation

PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform X1 [Nicotiana tabacum]
Sequence

MLSAPRAPAPAVAAPARFKFPNVCGNPVNLLLLHRNVGSSCKRVVVSTKAAYSRMPMDTP
GAYQLIDKESGDKFIVWGGTEDDDSSIPSKEVLSWKPLASTSPDNNHPPPTQSSSNEAST
RGLTGNFGRLKFRRMRDLVRKSYTKNKERDVVDHDKHNIADASSRSSFSSYNEPDQLKEQ
QTLSLPRGRAKIQQLEDRKNFQKLIRVEDEDRDIVIENVSKHFAGYSSDSHAKSARVVHP
GSKASASPLRGWGGGSSHYSLKREEIFRERRNLDDENNFFSRKSFQELGCCDYMIESLGN
QHFVRPSHIQAMTFGPIIAGKSCIISDQSGSGKTLAYLLPLIQCLRQEELQGLSKPSSQS
PRVVVLAPTAELASQVLSTCRSFSKSGVPFHSMVVTGGFRQRTQLENLRQELDILIATPG
RFMFLIKEGYLQLTNLKCAVLDEVDILFSDEDFETAFQCLIDSSPITTQYLFVTATLPMD
IYNKLVESFPDCELVSGPGMHRTSPGLEEFLVDCSGDETAEKSPDTAFINKKNALLHLVE
DSPVPKTIVFCNKIDCCRKVENALKRFDRKGFSIKILPFHAALDQGRRLANMEEFRRSKM
ENVCLFLVCTDRASRGIDFEGVDHVVLFDYPRDPSEYVRRVGRTARGAGGKGKAFIFAVG
KQVSLARRIMERNKKGHPVHDVPSILT

Transcript Sequence

Gene sequence data has not been registered.